Open access
Jul 2026
Mavchen-1: A Conformational Ensemble Platform for Protein–Ligand Pose Prediction That Substantially Outperforms Static Structure Prediction in a Category-Stratified Benchmark
A category-stratified, statistically powered benchmark comparing pose prediction from receptor conformational ensembles against AlphaFold2, used as a matched static-structure baseline, across 29 protein–ligand systems spanning cryptic-pocket, induced-fit, water-mediated, and autoimmune-indication target classes is presented.
Ryan Varghese, Pooja Tiwary, Krishil Oswal
· bioRxiv · 0 citations