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Paulo A. F. Nuin

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#small language model Open access Sep 2026

vcfclick: embedded VCF databases with auditable natural-language queries

Small VCF databases, one per cohort. Variants, genotypes, and samples live in either chDB (embedded ClickHouse) or DuckDB; gene and ClinVar annotations live in a sibling DuckDB file. A bundled Model Context Protocol server exposes a small set of tools so a language-model client can query the cohort in natural language...

Paulo A. F. Nuin · 0 citations
#small language model Open access Sep 2026

vcfclick: embedded VCF databases with auditable natural-language queries

Small VCF databases, one per cohort. Variants, genotypes, and samples live in either chDB (embedded ClickHouse) or DuckDB; gene and ClinVar annotations live in a sibling DuckDB file. A bundled Model Context Protocol server exposes a small set of tools so a language-model client can query the cohort in natural language...

Paulo A. F. Nuin · 0 citations
#small language model Open access Sep 2026

vcfclick: embedded VCF databases with auditable natural-language queries

Small VCF databases, one per cohort. Variants, genotypes, and samples live in either chDB (embedded ClickHouse) or DuckDB; gene and ClinVar annotations live in a sibling DuckDB file. A bundled Model Context Protocol server exposes a small set of tools so a language-model client can query the cohort in natural language...

Paulo A. F. Nuin · 0 citations

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