Author

Paul Wilmes

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Open access Sep 2026

MAP: a comprehensive pipeline for mobilome annotation and cargo gene characterisation in prokaryotic (meta)genomic assemblies

Summary Mobile genetic elements (MGEs) drive horizontal gene transfer in prokaryotes, disseminating antimicrobial resistance genes (ARGs), virulence factors (VFs) and biosynthetic gene clusters (BGCs). Given their importance, there is a pressing need for a single, open source tool that annotates the MGE repertoire toge...

Alejandra Escobar-Zepeda, Martin Beracochea, Tatiana A. Gurbich et al. · bioRxiv · 0 citations

Review Open access Sep 2026

Integrating multi-omics technologies to decipher microbiome functions

This perspective highlights recent advances in multi-omics microbiome research, outlines key obstacles in data integration and metadata harmonization, and proposes a collaborative roadmap for scalable, FAIR-compliant multi-omics investigations and potentially disruptive Artificial Intelligence advances.

T. Van Den Bossche, Eunice Lazau, Velma T. E. Aho et al. · Nature Communications · 0 citations