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Paul D. Cotter

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Review Open access Aug 2026

From fruit waste to foods via fermentation

The increasing generation of fruit waste represents a major environmental and economic challenge for the agri-food sector, while also offering significant opportunities for sustainable valorisation within the framework of the circular economy. Fruits rejected for cosmetic reasons, together with processing by-products, are rich sources of dietary fibre, sugars and bioactive compounds that can be converted into value-added products. This review aims to provide a comprehensive overview of microbial fermentation as a sustainable strategy for fruit waste valorisation, with particular emphasis on the role of lactic acid bacteria, acetic acid bacteria, yeasts and microbial consortia in improving the nutritional, technological and functional properties of fruit-derived substrates. Current evidence demonstrates that microbial fermentation not only preserves fruit biomass but also enhances its value through the degradation of complex carbohydrates, the biotransformation of phenolic compounds, the production of bioactive metabolites and the generation of functional ingredients. This review further discusses the contribution of viable microorganisms and postbiotic components to product functionality, as well as the importance of microbial viability, processing conditions and storage stability for the development of safe and functional fermented foods. In addition, it highlights recent advances in the use of microbial consortia and identifies the mechanisms governing microorganism–plant matrix interactions as a key area requiring further investigation. Overall, the available literature supports fermentation as a versatile and effective strategy for transforming fruit waste into high-value food products. By integrating current knowledge on microbial metabolism, functionality and processing challenges, this review identifies the main scientific and technological gaps and outlines future research priorities, including microbial consortium design, process scale-up, regulatory considerations and life cycle assessment, to facilitate the industrial implementation of sustainable fruit waste biorefineries.

Inés Calvete-Torre, Samuel Breselge, J. Leech et al. · 0 citations
Open access Jul 2026

Genetic and enzymatic basis of xylooligosaccharide metabolism by Bifidobacterium longum

ABSTRACT Bifidobacteria are common members of the human gut microbiota and are associated with host health. Bifidobacterium longum subsp. longum (B. longum) is prevalent across host ages and can utilise diverse plant-derived glycans, including xylooligosaccharides (XOS), that are indigestible by humans. Here, we show that XOS utilisation is strain specific among members of B. longum. In B. longum NCIMB 8809, growth on XOS induced transcription of genes encoding three glycoside hydrolases (XouA, XouB, and XouC), together with adjacent genes (xouDEF) predicted to encode an ABC-type carbohydrate uptake system. Biochemical analyses demonstrated that XouA and XouC are β-xylosidases, whereas XouB is an α-arabinofuranosidase. Genetic disruption and complementation experiments showed that XouA and the XouDEF uptake system are required for growth on XOS. Together, these findings identify the genetic and enzymatic basis of XOS utilisation in B. longum and highlight how strain-level variation in carbohydrate metabolism may inform the design of targeted prebiotic and synbiotic strategies to promote gut health.

Lisa Friess, F. McAuliffe, Paul D. Cotter et al. · 0 citations

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