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Sponsored Design Multi-Agent AI Systems Using MCP and A2A: Engineer your own Pyt Design Multi-Agent AI Systems Using MCP and A2A: Engineer your own Pyt

Author

Ning Zhu

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Open access Sep 2026

HighFold4: extending AlphaFold3 to accurate cyclic peptide conformation prediction via custom chemical connectivity

Abstract While AlphaFold3 has revolutionized protein structure prediction and supports noncanonical amino acids, its architecture always fails to reliably generate the closed-ring topologies characteristic of cyclic peptides. Existing adaptations, such as imposing distance constraints via an offset matrix, enforce ring...

Cheng-Yun Zhang, Wentong Wang, Ren-Jie Zhu et al. · 0 citations
Jul 2026

HighDB: a structure-annotated cyclic peptide database for comparative analysis, template retrieval, and design-oriented applications

A unified annotation framework for topological and conformational descriptors is provided and HighDB is compared with representative cyclic peptide resources, showing broader annotation coverage and the largest collection of experimentally resolved cyclic peptide structures among the databases examined.

Yi-Qi Xu, Ning Zhu, Tianfeng Shang et al. · 0 citations

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