Public LUAD transcriptomes identified two inflammation-associated subtypes and a five-gene score comprising CHRDL1, FDCSP, CXCL13, CYP4B1, and S100P that separated survival groups and marked distinct proliferative and immune expression programs.
Xing-Chen Zhou, Zhen Le, Pengxia Song et al.· bioRxiv· 0 citations
This review compares convolutional, Transformer-based and graph architectures used to represent local sequence features, chromatin state and three-dimensional genome organisation to their applications to transcription-factor binding, chromatin accessibility, gene expression, non-coding variant prioritisation and regulatory-sequence design.