Simple Summary Circular ribonucleic acid molecules help regulate gene activity and may contribute to many diseases. However, laboratory experiments can examine only a small fraction of the possible links between these molecules and diseases, making it difficult to identify the most promising candidates for further study. This study developed a computer-based method that combines several types of biological information to predict likely relationships between circular ribonucleic acids and diseases. When tested on a widely used collection of known associations, the method showed a strong ability to distinguish known associations from unconfirmed ones. It also performed well on two related collections involving other types of ribonucleic acid. In a liver cancer case study, 19 of the 20 highest-ranked circular ribonucleic acids were supported by published studies, while one remained a potentially new candidate. These findings suggest that the method can help researchers select promising associations for laboratory testing, reduce unnecessary experimental screening, and support the discovery of disease-related markers and treatment targets.
Mianshuo Lu, Mengmeng Wei, Changchun Liu et al.· Biology· 0 citations
Experiments on three cross-patient scRNA-seq data sets demonstrate that PathoGraph achieves stable annotation performance across 32 directed reference-to-query transfer tasks, showing competitive and stable performance compared with representative marker-based, correlation-based, and model-based annotation methods.
Yue C. Li, Mengmeng Wei, Xinfei Wang et al.· Journal of Chemical Informat...· 0 citations
MuSeL is proposed, a multi-scale adaptive graph representation learning framework that jointly mitigates the above issues from two complementary perspectives: global topology modeling and local structure optimization.
Yuehu Wu, Lei Wang, Zhengwei Li et al.· Proceedings of the 32nd ACM...· 0 citations
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