Author

Mahmoud ElHefnawi

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Open access Sep 2026

PathoBERT: A Hybrid Attention-Based Genomic Language Model for Read-Level Bacterial Pathogenicity Prediction

Motivation Although recent deep learning models have achieved promising results on read-level classification tasks, their robustness to realistic sequencing conditions, sensitivity to read length, and ability to support reliable genome-level inference remain incompletely characterized. Here, we present PathoBERT, a hyb...

Salem A. El-aarag, Mario A. Flores, M. E. Hasan et al. · bioRxiv · 0 citations

Review Sep 2026

PIWI-Interacting RNAs: Biogenesis, Molecular Mechanisms, Computational Advances, and Roles in Human Health and Disease.

This review follows the evolution of piRNA research, highlighting advances in their biogenesis, molecular mechanisms, and multifaceted roles in gene regulation and outlines how recent computational developments have improved functional and disease-association prediction.

Eman M. Ibrahim, Mariam Hossam El Dine, Hatem Zayed et al. · International Journal of Bio... · 0 citations

Jul 2026

Whole-exome sequencing identifies rare genetic variants in Egyptian patients with hypertrophic cardiomyopathy: a pilot study.

As the first genetic study of hypertrophic cardiomyopathy in an Egyptian population, this work expands the global mutational spectrum, demonstrates the utility of genetic testing for risk stratification and personalised management, and underscores the need to diversify genomic datasets for equitable precision medicine.

Rana E Negm, R. Gabre, A. A. El‐Sherif et al. · Cardiology in the Young · 0 citations