Data and software for: Does AlphaFold 3 Replace Protein–Protein Docking? A Blind Benchmark Against Fast-Fourier-Transform Docking and an Appraisal of Interface Confidence
Complete data and software accompanying a benchmark of template-free AlphaFold 3 co-folding against blind, clustering-reranked fast-Fourier-transform docking on 20 protein–protein complexes from Docking Benchmark 5, spanning the rigid-body, medium and difficult tiers and three interface classes, together with negative...