Author

Kaiqiang Hu

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Open access Aug 2026

Optimized Multiple Circular Sequence Alignment for Cyclic Peptide Motif Discovery

The optimised MCSA tool, validated on a library of 1,000 H2T cyclized peptides of length 18, enables library-scale cyclic peptide sequence alignment and is publicly available at https://github.com/IVB-Generative-Biology/mars-turbo.

Ye Yuan, Zhe Li, Kaiqiang Hu et al. · bioRxiv · 0 citations

#protein folding Open access Aug 2026

Benchmarking confidence estimation and rescoring for cyclic peptide–protein complex predictions

Findings identify pose ranking, rather than pose generation, as the major limitation of current cyclic peptide–protein complex prediction and demonstrate that complementary structural features can improve confidence-based pose selection.

Zhe Li, Ye Yuan, Kaiqiang Hu et al. · bioRxiv · 0 citations