Deploying dynamic heterogeneous graph embeddings in production faces key challenges of scalability, data freshness, and cold-start. This paper introduces a practical, two-stage solution that balances deep graph representation with low-latency incremental updates. Our framework combines HetSGFormer, a scalable graph tra...
Ma-Biao Long, Jia-Xi Liu, Yu-Feng Li et al.· IEEE Transactions on Knowled...· 0 citations
An RNA design approach, AlignIF, that leverages multiple structure alignment with cross-graph modeling and carefully hand-designed features to capture evolutionarily conserved structural patterns at the structural level, facilitating RNA sequence design outperforms existing state-of-the-art methods in test sets.
Sheng-Fan Wang, Jun Wang, Xiao-Jian Liu et al.· Nature Computational Science· 2 citations· ⚡1
IgGM2 follows a structure-to-design strategy: it first learns how immune receptors are positioned around fixed target structures, and then transfers this target-conditioned structural prior to CDR design, allowing frame-work geometry to adapt to designed CDRs without separate inverse folding or external sidechain packi...
Jian Ma, Fandi Wu, Lin Yao et al.· bioRxiv· 0 citations
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