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Author

Jianqiang Li

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Preprint Aug 2026

DegradeQuery: Counterfactual Tuple Pretraining for Context-Aware PROTAC Degradation Prediction

DegradeQuery, a context-aware prediction framework that converts label-missing records into a pretraining signal, is introduced and demonstrates that incompletely labeled PROTAC databases contain useful relational supervision and provide a practical route for learning context-aware degradation predictors from scarce ex...

Dong Xu, Zhang-Fan Yang, Jian-Tao Wu et al. · 0 citations
Jun 2025

READ: A Retrieval-Alignment Diffusion Framework for Structure-based Drug Design.

Structure-based drug design (SBDD) models are central to modern pharmaceutical research, enabling the rational exploration of protein-ligand interactions at atomic resolution. However, most existing approaches frame molecular generation as an isolated optimization or a one-to-one matching task, overlooking the shared b...

Dong Xu, Zhang-Fan Yang, Junchuang Cai et al. · 1 citation

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