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Jian Ma

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Book Open access Aug 2026

Caduceus: MoE Foundation Models for Unifying Biological and Natural Language

This paper introduces Caduceus, a family of MoE-enhanced foundation models built with a hierarchical pre-training paradigm to jointly integrate biological and natural language, and incorporates a multi-task instruction tuning phase, enabling robust protein parsing and natural language question answering.

Ming-Ze Yin, Yiheng Zhu, Jialu Wu et al. · 1 citation
Open access Jul 2026

IgGM2: An All-Atom Foundation Model for Adaptive Immune Receptor Design

IgGM2 follows a structure-to-design strategy: it first learns how immune receptors are positioned around fixed target structures, and then transfers this target-conditioned structural prior to CDR design, allowing frame-work geometry to adapt to designed CDRs without separate inverse folding or external sidechain packi...

Jian Ma, Fandi Wu, Lin Yao et al. · 0 citations
#natural language process... Book Open access Aug 2026

Caduceus: MoE Foundation Models for Unifying Biological and Natural Language

This paper introduces Caduceus, a family of MoE-enhanced foundation models built with a hierarchical pre-training paradigm to jointly integrate biological and natural language, and incorporates a multi-task instruction tuning phase, enabling robust protein parsing and natural language question answering.

Mingze Yin, Yiheng Zhu, Jialu Wu et al. · 0 citations

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