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Jian-Han Chen

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Open access Jul 2026

FARM: Forecasting Antibiotic Resistance in Mycobacterium tuberculosis using biophysics and machine learning

Antibiotic-resistant tuberculosis remains a major public health challenge, and rapid diagnosis of resistant infections based on genomic markers holds promise for improving time to effective treatment. However, the vast majority of clinically observed variants in resistance-associated genes remain of uncertain significa...

Mahbuba Tasmin, Shrishti Barethiya, Yu Wang et al. · 0 citations
#protein folding Open access Sep 2026

Intermediate-Resolution Modeling of Dynamic DNAs and Their Phase Separation

DNA is a fundamental biomolecule in eukaryotic cells, playing central roles in processes ranging from genome organization and transcription to innate immune signaling. Recent studies have revealed that DNA can undergo protein-free phase separation in the presence of divalent cations, yet the underlying molecular mechan...

Jessica Fong Ng, Shan-Long Li, Jian-Han Chen · 0 citations
Open access Aug 2026

Single-Molecule Nanopore Profiling of p53-TAD’s Conformational Dynamics, Interactions, and Inhibition

Investigating the conformational dynamics of intrinsically disordered proteins (IDPs) is essential to understanding how their structural heterogeneity underlies function and how their dysregulation contributes to diseases. Here, we utilized an MspA nanopore-based approach for studying the conformational dynamics and in...

David DeCoeur, Samantha A Schultz, Jianhan Chen et al. · 0 citations
Open access Aug 2026

Antibiotic condensates activate magnesium signaling to drive drug tolerance

The spatial distribution of small molecules within cells shapes their biological activity, yet these distributions are generally assumed to be governed passively by reaction-driven electrochemical gradients. Here we show that aminoglycoside antibiotics actively control their own subcellular organization by undergoing p...

Yuefeng Ma, Wen Yu, E. Moon et al. · 0 citations

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