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J. Vanitha

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Open access Jul 2026

Genetic diversity of traditional and improved rice (Oryza sativa L.) genotypes assessed using agro-morphological and physiological traits

Rice (Oryza sativa L.) is a major staple crop possesses extensive genetic variability, particularly among traditional landraces that serve as valuable resources for yield improvement, stress tolerance and nutritional enhancement. The present study evaluated 130 rice genotypes for 21 agro-morphological traits and physiological traits under field conditions using an augmented design during kharif 2024. Genetic divergence was estimated using Mahalanobis D² statistics and genotypes were grouped using Tocher’s clustering method. The analysis classified genotypes into 33 clusters, with Cluster 1 comprising the highest number of entries (22), while Clusters 12–33 were represented by highly divergent singleton genotypes. Large clusters were characterised by early flowering, moderate maturity and optimal plant height, whereas medium and singleton clusters exhibited distinct trait combinations such as higher grain yield, longer flag leaf, increased tiller number, elevated chlorophyll content (SPAD) and greater 1000-seed weight. The presence of substantial inter-cluster divergence suggests wide genetic variability among the studied genotypes. Selection of genetically distant parents, particularly from singleton and medium clusters, may enhance heterosis and recombination for yield and adaptive traits. These findings provide insights into the genetic diversity of rice germplasm and support strategic parent selection for developing high-yielding, climate-resilient and nutritionally improved rice varieties.

Hariharan, R. Mahendran, K. Satheeskumar et al. · 0 citations
Open access Jul 2026

Trait Contributions to Yield in Rice Genotypes: Insights from PCA and Cluster Analysis with Emphasis on Pollen Fertility

Background: Rice (Oryza sativa L.) productivity is increasingly constrained by climate variability, biotic stresses and limited natural resources, necessitating the effective utilisation of genetically diverse germplasm. Traditional rice landraces possess valuable adaptive, stress-tolerant and yield-related traits; however, their potential remains largely underutilized in breeding programmes. Methods: The present investigation was conducted during the zaid season of 2025 under field conditions using 130 rice (Oryza sativa L.) landraces evaluated in an augmented experimental design. A total of 21 agronomic, physiological and reproductive traits were assessed. Genetic divergence and trait relationships were analysed using principal component analysis (PCA) and hierarchical cluster analysis to identify the major traits contributing to phenotypic variability and yield performance. Result: Eight principal components with eigenvalues greater than one explained a substantial proportion of the total phenotypic variation. The first two components contributed most of the variability and were primarily associated with plant vigour, reproductive efficiency, biomass accumulation and yield-related traits. Plant height (X3), flag leaf length (X4), internode length (X7), grains per panicle (X9), 1000-seed weight (X10) and pollen fertility (X19) were the major contributors to genotype differentiation. Cluster analysis grouped the 130 genotypes into four distinct clusters. Groups I, II and IV exhibited high pollen fertility and superior yield performance, whereas Group III showed lower pollen fertility and poor yield traits. PCA biplot analysis further revealed a close association of high-yielding genotypes with pollen fertility, biomass traits and physiological efficiency. pollen fertility emerged as a key trait influencing genetic divergence and yield performance. The genetically diverse and superior-performing genotypes identified in this study represent valuable resources for rice improvement programmes aimed at enhancing productivity and adaptability.

R. Mahendran, B. Hariharan, K. Satheeskumar et al. · 0 citations

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