Author

J. Ricarte-Filho

2 papers indexed here

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Open access Sep 2026

GATES: A Lightweight Tool Automating Pathogenic Variant Discovery From Raw Whole-Exome Sequencing Data

Background Whole-exome sequencing is a widely used technology to identify pathogenic variants in cancer. Although sequencing itself has become increasingly accessible, downstream analysis remains computationally complex, presenting a challenge for many researchers. Existing pipelines lack integrated support for somatic...

Nicholas E. Bambach, J. Ricarte-Filho, E. R. Reichenberger et al. · Cancer Informatics · 0 citations

Open access Sep 2026

Distinct molecular profiles of indeterminate and malignant thyroid nodules in patients under 21 years of age

The RET/NTRK/ALK-positive <21-year group demonstrated enrichment of angiogenesis and EMT pathways, higher ERK/EMT/FMT scores, and lower BRS/TDS vs genotyped-matched adults, providing mechanistic insight into the more invasive phenotype in pediatric and young adult TNs.

J. Ricarte-Filho, L. Castellanos, Steven G. Waguespack et al. · Endocrine-Related Cancer · 0 citations