Author

Ilias Tagkopoulos

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Preprint Oct 2026

Integrated omics reveals actionable drivers of bioactive variation in US milk

Despite milk being a global dietary staple, the molecular basis of its health-relevant bioactivity and the factors governing fine-scale compositional variation remain poorly understood. Here, we present an integrated seven-layer omics characterization of 60 US retail milk samples from ten geographic regions, combining...

Cheng-En Tan, M. Barboza, Pagkratios Tagkopoulos et al. · 0 citations

#artificial intelligence Preprint Apr 2025

SkillFlow: Scalable and Efficient Agent Skill Retrieval System

SkillFlow demonstrates that framing skill acquisition as an information retrieval task is an effective strategy, and that the practical impact of skill-augmented agents hinges on corpus coverage and skill quality, particularly the density of runnable code and bundled artifacts.

Fang-Zhou Li, Pagkratios Tagkopoulos, Ilias Tagkopoulos · 21 citations · ⚡2

Open access Aug 2026

From metabolomics dark matter to bioactivity: a computational framework for prioritizing food-derived bioactive compounds

Despite the growing scale of untargeted food metabolomics, scalable approaches for translating raw LC-MS profiles into functionally prioritized, experimentally testable candidates remain limited. Most detected features remain structurally unresolved, and the few that are annotated cannot be reliably connected to wh...

Pranav Gupta, Michael Gunning, Selena Ahmed et al. · npj Science of Food · 0 citations