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Author

I. Mouratidis

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3 papers indexed here

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Open access Aug 2026

Derivation of oligonucleotide barcodes that are absent from natural sequences

BarcodesDB is presented, a comprehensive database of synthetic DNA barcodes systematically identified by scanning 403 199 complete organismal genome assemblies across the tree of life, together with 215 Gbp of raw metagenomic sequencing reads spanning marine, soil, polar and host-associated environments, providing maxi...

Michail Patsakis, K. Provatas, I. Mouratidis et al. · 0 citations
Open access Oct 2026

Landscape and mutational dynamics of G-quadruplexes across the complete human genome

G-quadruplexes (G4s) are alternative DNA structures with diverse biological roles, but their examination in highly repetitive parts of the human genome has been hindered by the lack of reliable sequencing technologies. Recent long-read based genome assemblies have enabled their characterization in previously inac...

Nikol Chantzi, Shi Wei. Liew, Aurell Wijaya et al. · 0 citations
Open access Jul 2026

Accelerating inference in genomic and proteomic foundation models via speculative decoding

Abstract Motivation Genomic and protein foundation models (GFMs and PFMs) have demonstrated strong performance in learning the language of DNA and proteins, but their use in large-scale sequence generation is limited by the latency of autoregressive decoding. Because every token triggers a forward pass of a large Trans...

K. Provatas, Aris Karatzikos, Charalampos Koilakos et al. · 0 citations

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