Author

Hsiao H. Sung

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Open access Dec 2023

LncPNdeep: A long non-coding RNA classifier based on large language model with peptide and nucleotide embedding

A concatenated deep neural network that incorporates both peptide and nucleotide embedding from masked language modeling (MLM), being able to discover complex associations between sequence information and lncRNA classification.

Zongrui Dai, Feiyang Deng, Hsiao H. Sung · bioRxiv · 4 citations

#large language models Open access Oct 2026

LncPNdeep: A long non-coding RNA classifier based on large language model with peptide and nucleotide embedding.

Accurate classification of long non-coding RNAs (lncRNAs) is essential for transcriptome annotation and understanding gene regulation. Existing computational methods predominantly rely on nucleotide sequence features, frequently overlooking biologically relevant peptide signals encoded within lncRNAs. To overcome this...

Zongrui Dai, Feiyang Deng, Hsiao H. Sung · Non-coding RNA Research · 0 citations