Author

Hongsong Feng

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Open access Aug 2025

CAKR: commutative algebra k-mer representations for genomics

Despite the availability of various sequence analysis models, comparative genomic analysis remains a challenge in genomics, genetics, and phylogenetics. Commutative algebra, a fundamental tool in algebraic geometry and number theory, has rarely been used in data and biological sciences. In this study, we introduce comm...

F. Suwayyid, Yuta Hozumi, Mushal Zia et al. · Nature Communications · 13 citations · ⚡2

Preprint Jul 2026

Commutative Algebra Learning for Protein Flexibility Analysis

A commutative algebra-based learning framework, termed CAL, for protein B-factor prediction, that achieves robust and consistent performance across diverse datasets and is competitive with existing state-of-the-art methods.

Honghao Zhang, Hongsong Feng · 1 citation