Human genetics needs benchmarks for evaluating variant scores against observed phenotypic consequences. We therefore present UKBBGym, which evaluates coding and non-coding scores against plasma protein abundance and quantitative traits observed in carriers of ultra-rare variants in the UK Biobank. This design avoids as...
Shubhankar Londhe, Eva Holtkamp, Georgios Tsitsiridis et al.· bioRxiv· 0 citations
The Kernel Allelic Series Model (KASM) is introduced, which integrates multiple functional annotations to form a kernel describing how allelic effects within a gene covary, and AlphaMissense is the single most enriched missense predictor, but a composite score doubles its enrichment.
Kangcheng Hou, H. Li, E. Nason et al.· medRxiv· 0 citations
Together, these results implicate a constellation of rare variants that map onto neuronal biology and demonstrate that diverse global populations converge on shared genetic signals underlying BD risk.
Calwing Liao, Robert Ye, J. Sealock et al.· medRxiv· 0 citations
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