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Gabriele Berg

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Review Open access Aug 2026

Lacto-fermented vegetables as dynamic food ecosystems: emerging mechanisms along the microbiome–gut–brain axis

Lacto-fermented vegetables (LFVs) are traditional foods produced through the microbial transformation of plant materials by lactic acid bacteria, with additional contributions from yeasts and other microorganisms. Fermented foods have been increasingly investigated for their potential modulation of the microbiome-gut-brain axis. This research has mainly focused on dairy fermentations, leaving LFVs largely underexplored. This mini review examines LFVs and their emerging mechanisms within the microbiome-gut-brain axis (MGBA). It emphasizes their character as evolving microbial ecosystems and as sources of bioactive metabolites. During the fermentation process, ecological succession drives the production of a variety of compounds, including organic acids, amino acids and lipid derivatives, transformed phytochemicals, structural microbial components, and micronutrients. Many of these compounds have plausible connections to MGBA routes. These links include modulation of the intestinal barrier, local and systemic immune responses, enteroendocrine signaling, and autonomic/vagal pathways. Particular focus is given to the small intestine as an early signaling interface between metabolites and host physiology. Scientific evidence of the beneficial effects of LFVs on human health is limited. Existing studies show improvement in gastrointestinal symptoms, cardiometabolic risk factors and gut microbial function. Studies connecting LFVs to neurological and psychological health are lacking. We propose understanding LFVs as complex food ecosystems whose effects on host physiology arise from interactions among microorganisms, metabolites, environmental conditions, and host responses. Future research integrating food multi-omics, microbiome analyses, immune profiling, neuroendocrine measurements, and clinical outcomes may help clarify the role of LFVs in MGBA and support the development of targeted fermentation-based nutritional strategies for intestinal, immune, and neuropsychological health.

G. Ngoumou, Steven Ngandeu Schepanski, F. Nejati et al. · 0 citations
Open access Jul 2026

Metagenomic analysis reveals functional potential and storage-driven dynamics of the Kalamata olive microbiome

Background Fermented olives are a staple of the Mediterranean diet due to their nutritional value. Despite advances in olive microbiome research, published research on the functional contributions of fermented food-associated microbiota and the impact of storage on these microbial communities remains limited. Methods We studied the bacterial communities of ready-to-eat Kalamata olives, stored in glass jars or vacuum-sealed bags at various temperatures (4°C, 8°C and 15°C) for 55-day period. The bacterial abundance, taxonomical composition and functional potential were analyzed by quantitative PCR and amplicon sequencing of 16 rRNA gene, and metagenome sequencing. Results The microbiota was dominated by Lactobacillaceae (94.6%), a family of lactic acid bacteria (LAB), with dominant genera such as Pediococcus, Lactiplantibacillus and Secundilactobacillus. At the functional level, bacterial genes involved in the biosynthesis of vitamins B1, B2, B5, B7, B9, B12, and vitamin K, as well as short-chain fatty acid metabolism, were observed. Importantly, those functions were not restricted to LAB, underscoring the potential functional contribution of non-LAB taxa to the olive microbiome. Despite conservation, post-fermentation storage, especially the incubation time, temperature, and packaging, influenced the bacterial communities. Lactic acid bacteria were enriched in olives stored at 15°C, whereas non-LAB taxa proliferated more at lower temperatures. Conclusion Our study showed that Kalamata olives contain a highly abundant and diverse microbiota that responds to storage practices and carries genes encoding functions that may contribute to the characteristics and quality of the fermented product.

Matevž Zlatnar, Rodrigo P. Alves, G. Toledo et al. · 0 citations

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