As generative models and AI agents propose chemical reactions at a scale beyond expert review, feasibility verifiers decide which proposals enter synthesis planning. But do their decisions agree with chemists across different kinds of candidates? We introduce FREA, a benchmark of 751 reactions labeled by expert chemist...
Bo-Tao Yu, Bo Zhou, Daniel Adu-Ampratwum et al.· 0 citations
MMORF is presented, a framework for constructing language model-based multi-agent systems (MAS) for multi-objective retrosynthesis planning that achieves strong safety and cost metrics on soft-constraint tasks, frequently Pareto-dominating baseline routes, and outperforming state-of-the-art baselines.
Frazier N. Baker, Trieu Nguyen, Reza Averly et al.· arXiv.org· 1 citation
RIDE, a Reference-anchored Inference-time Diffusion Editing framework for scaffold hopping, is introduced and demonstrates its ability to generate distinct scaffolds with different structures and properties, and its ability to introduce substantial 2D variation while maintaining very high 3D similarity.
Ruo-Xi Gao, Frazier N. Baker, Trieu Nguyen et al.· 0 citations
Drug discovery and development is time-consuming and resource-intensive, motivating computational approaches such as diffusion models for de novo drug design. Many such models follow the structure-based drug design (SBDD) paradigm, generating molecules to fit a target binding pocket. However, existing diffusion-based S...