Author

Elliot Layne

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Open access Sep 2026

AtomWeaver: Multi-Component Flow Matching with a Structured Geometric Prior Facilitates Non-Canonical Peptide Design

Fixed-backbone sequence discovery, or inverse folding, is a critical recurring task in the development of new polypeptide therapeutics. Once promising backbones are established for a target pocket, computational inverse folding methods greatly help accelerate generation of candidate sequences. Such methods are mature f...

A. Kitaygorodsky, D. E. Hostallero, Aron Broom et al. · bioRxiv · 0 citations

#machine learning Open access Oct 2023

PhyloGFN: Phylogenetic inference with generative flow networks

The framework of generative flow networks (GFlowNets) is adopted to tackle two core problems in phylogenetics: parsimony-based and Bayesian phylogenetic inference and it is demonstrated that the amortized posterior sampler, PhyloGFN, produces diverse and high-quality evolutionary hypotheses on real benchmark datasets.

Mingyang Zhou, Zichao Yan, Elliot Layne et al. · International Conference on... · 37 citations · ⚡3