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Open access Oct 2026

Developmental divergence in gene regulation underlies trophic innovation in Lake Victoria cichlids

Abstract The role of developmental shifts in the emergence of ecological diversity during adaptive radiation remains largely uncharacterized. Here, we investigate the developmental gene regulatory landscape of trophic innovation in the rapid adaptive radiation of cichlid fishes from Lake Victoria (LV), which evolved in...

Anna Duenser, Pooja Singh, E. P. Ahi et al. · 0 citations
Review Open access Sep 2026

Transcriptional biomarkers of microplastic exposure in fish: a tissue-resolved scoping review.

Microplastic exposure in fish has been increasingly assessed at the transcriptional level, yet findings remain dispersed across species, polymers, exposure routes, and tissues, limiting the identification of robust and transferable biomarkers. This scoping review examines which tissue-specific and cross-tissue transcri...

Sandra Bračun, E. P. Ahi · 0 citations
Review Open access Sep 2026

Epitranscriptomic regulation of Notch signaling.

A transcript-centered framework separates direct epitranscriptomic regulation of Notch components from broader pathway rewiring and provides a basis for prioritizing mechanistically supported RNA-level therapeutic targets.

Vahid Saqagandomabadi, S. Zargar, Matin Pooladi et al. · 0 citations
Review Open access Sep 2026

Toward integrating a molecular understanding of the herbivore–carnivore trophic adaptations in cichlid fishes

Cichlid fishes have repeatedly evolved equivalent herbivorous and carnivorous trophic adaptations in various waterbodies, creating natural experiments for uncovering how diet reshapes molecular systems. This review synthesizes cichlid-specific genomics, transcriptomics, and physiology to explain how the entire system...

E. P. Ahi, Christian Sturmbauer, R. Albertson · 0 citations
Review Open access Aug 2026

How Epitranscriptomic Machinery Senses Environmental Cues

A kinetics‐to‐sensors approach for interpreting time‐resolved epitranscriptomic datasets and prioritizing perturbations that discriminate among candidate upstream inputs is proposed and outline conceptual gaps and experimental practices needed to establish causal cue‐to‐mark chains.

Shayan Jalali, E. P. Ahi · 1 citation

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