Graph-based models provide the lowest errors in property prediction, retain their advantage across the evaluated training-set sizes, and remain robust to increasing repeat-unit complexity, according to the PolyBench26 benchmark.
Robert W. Learsch, Nicholas T. Liesen, Daniel S. Levine et al.· 0 citations
This work demonstrates quantum-accurate treatment of all-atom, complete enzymes in explicit solvent comprising up to 54k atoms and 1 microsecond of total simulation time using the machine-learned interatomic potential (MLIP) eSEN-omol, establishing MLIPs as a practical route to QM-accurate simulations of enzyme catalys...
Meng Gao, Armin Shayesteh Zadeh, Aniruddha Seal et al.· 1 citation· ⚡1
Electronic rearrangements associated with bond forming/breaking in catalytic enzymes require quantum mechanical (QM) treatment beyond classical molecular mechanics (MM). Hybrid QM/MM methods enable tractable simulations but require system-specific setup and are sensitive to the QM region choice and treatment of the QM/...
Meng Gao, Armin Shayesteh Zadeh, Aniruddha Seal et al.· 0 citations
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