Open access
Aug 2026
Automated generation of a gene perturbation transcriptomic atlas using large language models
An automated pipeline is developed that uses large language models to find single-gene perturbation experiments in NCBI-GEO and reconstruct their case-control sample groupings, along with the perturbed gene, perturbation type and cell line as structured, ontology-normalised fields.
J. Soul, D. Young
· bioRxiv · 0 citations