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Author

C. Benoist

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Open access Sep 2026

A Gene-Program Architecture of Mouse T cells

We present a gene-program framework for resolving mouse T cell heterogeneity across the immgenT atlas. On ∼800,000 T cells spanning lineages, organs, and immune challenges, we defined 200 reproducible gene programs, discovered by empirical Bayes matrix factorization approach and validated through a new deep learning ap...

Ziang Zhang, Tian-Ze Wang, Siba Smarak Panigrahi et al. · 0 citations
Jul 2026

Mapping the chromatin landscape of the mouse immune system with low-input automated CUT&RUN 2260000

A low-input, automated CUT&RUN workflow that incorporates standardized sample preparation to ensure reliable generation of data at the consortium scale is developed and validated and establishes a scalable, high-resolution platform for profiling chromatin landscapes from minimal cell inputs.

Aaron J. Alcala, M. Marunde, C. L. Windham et al. · 0 citations

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