Author

Bilal Sharif

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Open access Oct 2026

G-ALN: a GPU-accelerated BWA-aln algorithm for palaeogenomics

Summary The most commonly used method to achieve optimal mapping for short and damaged ancient DNA (aDNA) reads is the BWA-aln algorithm with seeding disabled. However, this CPU-based algorithm is computationally demanding, as the aligner must tolerate mismatches and indels across the entire read. To improve alignment...

Bilal Sharif, Krister Hedfors, T. van der Valk et al. · bioRxiv · 1 citation

Open access Sep 2026

Demographic history and management practices shape the genomic landscape of New Zealand’s feral Kaimanawa Horses

Genome-wide SNP data is generated and integrated with previously generated mitochondrial and Y-chromosome markers from Kaimanawa Horses to compare them with 22 domestic breeds and characterize their genetic composition, population structure, genetic diversity, and demographic history, including changes in effective pop...

Arne Bielke, S. S. Ardestani, Bilal Sharif et al. · BMC Genomics · 0 citations