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Sponsored AI Networking Cookbook: Practical recipes for AI-assisted network automation and development AI Networking Cookbook: Practical recipes for AI-assisted network automation and development

Author

B. Erman

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Open access Oct 2026

The Geometry of Allostery: Quantifying Pathway Organization in Protein Networks.

A central challenge in dynamic allostery is understanding how local ligand-binding events selectively route and couple distant communication pathways. Here, we develop the Laplacian minor hierarchy, a parameter-free mathematical framework that extracts higher-order geometric invariants directly from protein contact net...

F. Ciftci, B. Erman · 0 citations
Open access Aug 2026

Flexibility Drives Information Flow in Proteins: Fluctuation Potential Gradients Dictate Directional Entropy Transfer

Allosteric communication in biomacromolecules is fundamentally governed by thermal fluctuation gradients, yet standard Gaussian Network Models (GNMs) treat atomic contacts as uniform, binary couplings without differentiating core constraints from solvent-exposed surface flexibility. Here, we present an analytical matri...

Fatma Senguler Ciftci, B. Erman · 0 citations

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