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Aviv Regev

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Archetype analysis of multiplexed antibody imaging reveals interpretable morphological programs in optical pooled screens

High-content imaging-based screens with small molecule or genetic perturbations rely on rich optical phenotypes, yet how distinct subcellular markers contribute complementary biological information remains unclear. Here, we introduce CellMAPP, a multiplexed organelle imaging platform that uses optical pooled screens wi...

Paula Coelho, Ana Carolina Leote, He-Ming Yao et al. · 0 citations

When to Align, When to Predict: A Phase Diagram for Multimodal Learning

A data-driven procedure is presented to locate real-world datasets in this diagram using a small labeled subsample, identifying the preferred objective and prediction direction before any cross-modal training, and identifying when no objective in the CA/CP family can improve on the stronger modality alone.

Ilay Kamai, Hugues Van Assel, Aviv Regev et al. · 1 citation
Open access Aug 2026

Perturb-ME: Scalable mechanism discovery from phenotype-enriched genome-wide screens

Perturb-ME, along with agentic interpretation, provide a scalable framework for comprehensive functional discovery from phenotype-enriched genetic screens and combines genome-scale CRISPR screening, phenotype-based enrichment and multimodal single-cell profiling.

Han-Chen Wang, Jiacheng Gu, Chris J. Frangieh et al. · 0 citations
Jul 2026

Autonomous biomedical research with an artificial intelligence agent.

Biomni envisions artificial intelligence augmenting human scientists and accelerating discovery by interpreting multi-modal datasets, optimizing protein stability, orchestrating wet-lab instruments, and generating experimentally testable protocols.

Kexin Huang, Serena Zhang, Hanchen Wang et al. · 19 citations · ⚡2

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