Author

Athi N. Naganathan

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#protein folding Open access Aug 2026

Hashi: Bridging Statistical Model Derived 1D Microstate Encodings and Protein 3D Structural Ensembles

Hashi is introduced, a pipeline to rapidly generate realistic structural ensembles from the outputs of the structure-based Wako- Saitô-Muñoz-Eaton (WSME) statistical mechanical model of protein folding, applicable to a variety of single-chain monomeric systems.

H. Madhan, Athi N. Naganathan · bioRxiv · 1 citation

Open access Aug 2026

Switching Functional DNA-Binding Modes by Tuning Protein Order-Disorder Equilibria

A conserved sequence-ensemble-dynamics code in Nhp6A is revealed wherein not just stability, but also phosphorylation-induced conformational switching, disordered tail dynamics, and DNA binding-bending closely coordinate chromatin accessibility is revealed.

Shilpi Laha, H. Madhan, Yuji Itoh et al. · bioRxiv · 0 citations