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Sponsored AI Networking Cookbook: Practical recipes for AI-assisted network automation and development AI Networking Cookbook: Practical recipes for AI-assisted network automation and development

Author

Alise J. Ponsero

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Open access Aug 2026

Gut microbiome dysbiosis and functional alterations in Campylobacter-associated gastroenteritis using metagenomic approaches

ABSTRACT Campylobacter species are a major cause of bacterial gastroenteritis worldwide. Using shotgun metagenomic sequencing of stool samples from PCR-confirmed Campylobacter-positive patients and symptomatic PCR-negative controls, we reveal dysbiosis marked by reduced species richness (median Shannon diversity was si...

Bilal Djeghout, Alise J. J. Ponsero, N. Pedroso et al. · 0 citations
Open access Aug 2026

Defining the ESKAPE pathogen prophage repertoire with PHORAGER

PHORAGER (Prophage Hunting, vOtu Retrieval, Annotation and Genomic ExploRation), a scalable Nextflow pipeline for the standardised identification and quality assessment of prophages from bacterial genomes, validated using 30,824 publicly available ESKAPE pathogen genomes.

Xena Dyball, Alise J. Ponsero, James A. D. Docherty et al. · 0 citations

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