Author

Akshay Uttarkar

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Open access Oct 2026

An inspectable Grover algorithm-based amplitude-amplification workflow for k-mer discovery and motif scanning with genomic coordinate traceability

Motif discovery and motif scanning remain core primitives in genomics, but both tasks face combinatorial growth as k-mer length increases and as mismatch-tolerant searches expand the candidate space. In this work, we present MotifQu, a Python package and command-line tool that maps two common motif-analysis workflows—(...

Akshay Uttarkar, Vidya Niranjan · bioRxiv · 0 citations

#protein folding Open access Oct 2026

Scalable Decoupling Contact and Configuration Spaces in a Quantum-Enabled Protein Folding Workflow

Near-term quantum devices remain constrained by limited qubit counts, noise, and shallow circuit depth, restricting their direct application to peptide folding. This work addresses this limitation through a hybrid quantum–classical framework that separates global contact-space exploration from local configuration-space...

Akshay Uttarkar, Vidya Niranjan · bioRxiv · 0 citations