Author

Adam Izdebski

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#machine learning Preprint Nov 2025

Freeze, Diffuse, Decode: Task-Aware Adaptation of Transformer Embeddings for Antimicrobial Peptide Design

Freeze, Diffuse, Decode (FDD), a novel diffusion-based framework that adapts pre-trained embeddings to downstream tasks while preserving their underlying geometric structure, is introduced.

Pankhil Gawade, Adam Izdebski, Myriam Lizotte et al. · 0 citations

Open access Nov 2025

seqme: a Python library for evaluating biological sequence design from generative models

This work introduces seqme, a modular and highly extendable open-source Python library, containing model-agnostic metrics for evaluating computational methods for biological sequence design, and can be used to evaluate both one-shot generation and iterative optimization.

Rasmus Møller-Larsen, Adam Izdebski, Jan Olszewski et al. · Bioinformatics Advances · 2 citations