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A. Schaefer

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Open access Sep 2026

A natural temperature, elevation, and rainfall gradient over the Cascade Mountains drives changes in Populus trichocarpa stress response and microbial community structure

Abiotic stresses associated with warming and drought are increasing in frequency and severity due to climate change. However, microbial associations can partially mitigate their adverse effects on plant physiology. We examined the bacterial/archaeal and fungal communities with 16S rRNA and ITS2 gene region amplicon seq...

Kathryn E. Bazany, William A. Argiroff, A. Carrell et al. · 0 citations
#protein folding Open access Sep 2026

COPAL: An ensemble of protein-ligand co-folding models enriches preferred ligand predictions for the LuxR-family of quorum sensing receptors

The COPAL (combining ordered predictions of audited ligands) pipeline, which integrates multiple protein-ligand co-folding models to identify preferred AHLs for a specific LuxR, shows that unweighted rank aggregation of complementary co-folding models offers a general strategy for predicting receptor-ligand specificity...

Davi Nakajima An, A. Schaefer, Szu-Min Chang et al. · 0 citations

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