Author

A. Mchardy

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Open access Oct 2026

Second funding phase proposal: NFDI4Microbiota – National Research Data Infrastructure for Microbiota Research

Modern microbiological research generates vast quantities of data, particularly from high-throughput "omics" technologies. These datasets promise unprecedented insights into microbial diversity, function, and interactions, yet they are often deposited in unstructured formats with inadequate metadata, significantly hamp...

K. Förstner, Sina-Victoria Barysch, Anke Becker et al. · Research Ideas and Outcomes · 0 citations

Open access Sep 2026

Metax enables accurate cross-domain taxonomic profiling of metagenomes.

This broad evaluation demonstrated that Metax resolved bacterial and viral signatures of peri-implantitis in oral microbiomes and revealed signals suggestive of reagent-borne contaminants and reference misassemblies in plasma-cell-free DNA.

Zhi-Luo Deng, Nasim Safaei, A. McHardy · Cell · 0 citations

Open access Jul 2026

Comparative assessment of large language models for microbial phenotype assignment

This study systematically assessed the biological knowledge encoded in publicly available LLMs for structured phenotype assignment of microbial species, including state-of-the-art models such as Claude Sonnet 4 and the GPT-5 family of models.

Philipp C. Münch, Nasim Safaei, René Mreches et al. · Genome Biology · 0 citations